Here’s a list of some of the publicly available web applications I’ve written. Some of them remain at the ‘incomplete but working stage’ (like the Web2.0 perpetual beta, but worse).
Web applications : science
ResolveRef is a Google App Engine application, written in Python. It is an attempt at making a RESTful and human readable URL identifier for any paper in PubMed. It is based on an earlier version written with the Turbogears framework (OpenRef resolver), which in turn was based on an idea by Noel O’Boyle. The ResolveRef source code is available here.
Web applications : “non-science”
I have other interests, outside science (“What a well rounded individual”, I hear you say !). WiiRSS is a news aggregator site for Nintendo Wii news sources. I can’t claim too much credit here, since it’s a customization of Gregarious, which I didn’t write. Wiider (below) was written to ultimately supercede this application.
Wiider is a news feed reader optimized for the Nintendo Wii Internet Channel (Opera-powered). It’s still under active development … hopefully it will be ready for an official launch sometime in 2009.
Android Apps
Occyd is a geotagging application for Android, backed by a Google App Engine server. The idea is to be able to tag locations, del.icio.us-style, and provide fine-grained searching by both location and time. The project is still in the early stages (only just ‘alpha’), and development has slowed due to other time commitments, however to date (late-2009) I still haven’t seen a geolocation / geotagging app that fits the sweet spot the Occyd intends to occupy, so I intend to continue developing it as time permits.
Older web apps
They still work … they are just look ugly.
Estimate protein secondary structure content from CD spectra, “Raussens et al” method.
This is a simple CGI application for estimating protein secondary structure content based on a circular dichroism (CD) spectrum, using the method of Raussens et al, 2003. The Raussens method isn’t as accurate as some competing methods, but it is extremely useful if you need secondary structure estimates but cannot accurately measure the protein concentration of your sample (eg, due to the prescence of detergents). It also makes a nice sanity check to compare against the results from the CDPro suite or Dichroweb.
Quickchange(tm) mutagenesis primer design helper, “Zhang et al” method
I wrote this when I was doing some mutagenesis. The output is a little ugly, but it works. It can help design primers based on the method of Zheng et al, 2004, which is claimed to be better than the method recommended by Stratagene. I wrote this before I discovered PrimerX.
Silly biotech company name generator
This one really needs to be prettied up, and could do with an update with some more recent buzzword prefixes and suffixes.
I also have one or two web applications in ’stealth mode’ … when they are ready they will emerge. Watch this space 
